alterlab-ieu/alterlab-academic-skills

Stage-gated social-science methods spine — orchestrator + 5 validity gates (design/identifying-assumption, measurement, sampling/power, reflexivity, inference) and 11 analysis modules (causal inference, complex-survey analysis, SEM/psychometrics, multilevel models, QCA, SNA, ABM, text-as-data, qualitative analysis, meta-analysis, missing data) (17 skills)

researchsocial-scienceresearch-design

🔌alterlab-data-science🔌Plugin

Machine learning and statistics (scikit-learn, PyTorch, transformers, SHAP) (22 skills)

datamachine-learningstatistics

🔌alterlab-clinical-research🔌Plugin

Clinical decision support, medical imaging, and regulatory workflows (7 skills)

scienceclinicalmedical-imaging

🔌alterlab-research-tools🔌Plugin

Search, discovery, Zotero, qualitative methods, ethics, and open science (14 skills)

researchliterature-searchzotero

🔌alterlab-turkish-academia🔌Plugin

Turkish academic system workflows (YÖK, ÜAK, DergiPark, YÖK-Tez, TÜBİTAK, doçentlik) (12 skills)

researchturkish-academiayok

🔌alterlab-databases🔌Plugin

Connectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (39 skills)

datadatabaseapi

🔌alterlab-lab-integrations🔌Plugin

Laboratory platforms (Benchling, DNAnexus, Opentrons, Protocols.io) (9 skills)

sciencelab-automationbenchling

🔌alterlab-writing-tools🔌Plugin

Scientific writing, citations, grants, posters, and academic career (13 skills)

writingscientific-writingcitations

🔌alterlab-finance-economics🔌Plugin

Economic and financial data (FRED, Alpha Vantage, SEC EDGAR, market research) (7 skills)

datafinanceeconomics

🔌alterlab-methodology🔌Plugin

Research methodology and rigor scaffolds (Iron Laws, rationalization tables, decision flowcharts, systematic-reasoning checklists) (3 skills)

researchmethodologyresearch-rigor

🔌alterlab-faculty-life🔌Plugin

Faculty research-lifecycle and academic administration (syllabus AI-policy, IRB/consent, post-award grant admin, recommendation letters, accreditation AoL) (6 skills)

productivityfacultyteaching

🔌alterlab-visualization🔌Plugin

Publication-quality plotting and schematics (Matplotlib, Seaborn, Plotly) (9 skills)

productivityplottingmatplotlib

🔌alterlab-bioinformatics🔌Plugin

Genomics, proteomics, and single-cell analysis (Scanpy, BioPython, pysam, ESM) (38 skills)

sciencegenomicsproteomics

🔌alterlab-domain-specific🔌Plugin

Quantum computing, geospatial, materials, astronomy, and digital humanities (18 skills)

sciencequantumgeospatial

🔌alterlab-cheminformatics🔌Plugin

Chemistry and drug discovery (RDKit, docking, ADMET, mass spec) (12 skills)

sciencechemistrydrug-discovery

🔌alterlab-document-tools🔌Plugin

Document and Markdown conversion (MarkItDown, Open Notebook) (3 skills)

productivitymarkdowndocument-conversion

🔌alterlab-core🔌Plugin

Core research-to-publication pipeline plus teaching and thesis tools (10 skills)

researchwritingpeer-review

🏪Marketplaces1

🏪AlterLab-IEU/AlterLab-Academic-Skills🏪Marketplace

239 evaluated academic Claude/agent skills across 17 research domains (bioinformatics, data science, clinical, social-science methods, Turkish academia & more). Executable eval per skill, deterministic citation verifier, research→write→review→publish pipeline, and a skill-finder front door. Claude Code, Cursor, Codex, Gemini CLI & Copilot.

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