AlterLab-IEU/AlterLab-Academic-Skills

Genomics, proteomics, and single-cell analysis (Scanpy, BioPython, pysam, ESM) (38 skills)

Chemistry and drug discovery (RDKit, docking, ADMET, mass spec) (12 skills)

Clinical decision support, medical imaging, and regulatory workflows (7 skills)

Core research-to-publication pipeline plus teaching and thesis tools (10 skills)

Machine learning and statistics (scikit-learn, PyTorch, transformers, SHAP) (22 skills)

Connectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (39 skills)

Document and Markdown conversion (MarkItDown, Open Notebook) (3 skills)

Quantum computing, geospatial, materials, astronomy, and digital humanities (18 skills)

Faculty research-lifecycle and academic administration (syllabus AI-policy, IRB/consent, post-award grant admin, recommendation letters, accreditation AoL) (6 skills)

Economic and financial data (FRED, Alpha Vantage, SEC EDGAR, market research) (7 skills)

Laboratory platforms (Benchling, DNAnexus, Opentrons, Protocols.io) (9 skills)

Research methodology and rigor scaffolds (Iron Laws, rationalization tables, decision flowcharts, systematic-reasoning checklists) (3 skills)

Search, discovery, Zotero, qualitative methods, ethics, and open science (14 skills)

Stage-gated social-science methods spine — orchestrator + 5 validity gates (design/identifying-assumption, measurement, sampling/power, reflexivity, inference) and 11 analysis modules (causal inference, complex-survey analysis, SEM/psychometrics, multilevel models, QCA, SNA, ABM, text-as-data, qualitative analysis, meta-analysis, missing data) (17 skills)

Turkish academic system workflows (YÖK, ÜAK, DergiPark, YÖK-Tez, TÜBİTAK, doçentlik) (12 skills)

Publication-quality plotting and schematics (Matplotlib, Seaborn, Plotly) (9 skills)

Scientific writing, citations, grants, posters, and academic career (13 skills)