jaechang-hits

jaechang-hits/sciagent-skills

202 resources in this repository

GitHub
🎯202
227

🎯Skills202

🎯matplotlib-scientific-plotting🎯Skill

A library of 199 bioinformatics skills for AI coding agents, covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, a 27-point improvement over the baseline.

matplotlib-scientific-plotting
🎯pydicom-medical-imaging🎯Skill

The largest open-source skill library for scientific AI agents, with 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92.0% accuracy on BixBench, the highest among all tested systems.

pydicom-medical-imaging
🎯snakemake-workflow-engine🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92.0% accuracy on the BixBench benchmark, up from a 65% baseline.

snakemake-workflow-engine
🎯biopython-molecular-biology🎯Skill

The largest open-source skill library for scientific AI agents, with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

biopython-molecular-biology
🎯nature-figure-guide🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

nature-figure-guide
🎯astropy-astronomy🎯Skill

Part of SciAgent-Skills, a library of 199 scientific skills for Claude Code spanning genomics, proteomics, drug discovery, scientific writing, and data visualization, with proven 92% accuracy on the BixBench benchmark.

astropy-astronomy
🎯biopython-sequence-analysis🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, boosting BixBench benchmark accuracy from 65% to 92%.

biopython-sequence-analysis
🎯muon-multiomics-singlecell🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

muon-multiomics-singlecell
🎯cellchat-cell-communication🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering single-cell analysis, genomics, proteomics, drug discovery, and more, which achieved 92% accuracy on the BixBench benchmark.

cellchat-cell-communication
🎯string-database-ppi🎯Skill

A bioinformatics skill from SciAgent-Skills for protein-protein interaction analysis using the STRING database, part of a 199-skill scientific computing library that boosted BixBench accuracy to 92%.

string-database-ppi
🎯rdkit-cheminformatics🎯Skill

The largest open-source scientific skill library for AI agents, with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and more. Achieved 92.0% accuracy on BixBench, a +26.7 point improvement over baseline Claude Code.

rdkit-cheminformatics
🎯scientific-schematics🎯Skill

The largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92.0% accuracy on BixBench, boosting Claude Code baseline from 65% without fine-tuning.

scientific-schematics
🎯cellpose-cell-segmentation🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for scientific AI agents covering computational biology, cheminformatics, and biostatistics, which boosted BixBench benchmark accuracy from 65% to 92%.

cellpose-cell-segmentation
🎯napari-image-viewer🎯Skill

A scientific visualization skill from SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering data visualization, cell biology, and scientific computing across 11 categories.

napari-image-viewer
🎯pymc-bayesian-modeling🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering genomics, proteomics, drug discovery, biostatistics, and scientific computing, which achieved 92% accuracy on the BixBench benchmark.

pymc-bayesian-modeling
🎯reactome-database🎯Skill

A bioinformatics skill from SciAgent-Skills that provides domain knowledge for working with the Reactome pathway database, part of a 199-skill library for computational biology, systems biology, and multi-omics analysis.

reactome-database
🎯esm-protein-language-model🎯Skill

The largest open-source scientific skill library for AI agents, with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and biostatistics. Achieved 92% accuracy on the BixBench benchmark, a 26.7 percentage point improvement over baseline.

esm-protein-language-model
🎯autodock-vina-docking🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% on BixBench.

autodock-vina-docking
🎯datamol-cheminformatics🎯Skill

The largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, boosting BixBench benchmark accuracy from 65% to 92%.

datamol-cheminformatics
🎯kegg-pathway-analysis🎯Skill

A Claude Code skill from the SciAgent-Skills collection that provides guidance on KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis, enabling biological pathway mapping, enrichment analysis, and metabolic network exploration.

kegg-pathway-analysis
🎯scientific-manuscript-writing🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents that boosted BixBench accuracy from 65% to 92%. This skill provides guidance for scientific manuscript writing, peer review, LaTeX posters, slides, and figure preparation.

scientific-manuscript-writing
🎯statistical-analysis🎯Skill

SciAgent-Skills equips AI coding agents with 199 bioinformatics skills for computational biology, including RNA-seq, single-cell analysis, genomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

statistical-analysis
🎯pubmed-database🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for Claude Code that equips AI agents with domain-specific knowledge for computational biology, bioinformatics, and biostatistics. Boosted BixBench benchmark accuracy from 65% to 92%.

pubmed-database
🎯nnunet-segmentation🎯Skill

A skill from SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, which boosted BixBench scores from 65% to 92%.

nnunet-segmentation
🎯omics-analysis-guide🎯Skill

A collection of 199 bioinformatics skills for AI coding agents, covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, up from a 65% baseline.

omics-analysis-guide
🎯scientific-slides🎯Skill

Part of SciAgent-Skills, a 199-skill bioinformatics library that boosted BixBench accuracy from 65% to 92%, covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and scientific computing for Claude Code.

scientific-slides
🎯opencv-bioimage-analysis🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents that provides domain-specific knowledge for computational biology, bioinformatics, and biostatistics, boosting BixBench accuracy from 65% to 92%.

opencv-bioimage-analysis
🎯sympy-symbolic-math🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery for Claude Code. Achieved 92% accuracy on the BixBench bioinformatics benchmark.

sympy-symbolic-math
🎯matlab-scientific-computing🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on BixBench.

matlab-scientific-computing
🎯chembl-database-bioactivity🎯Skill

Part of SciAgent-Skills, the largest open-source scientific skill library with 199 bioinformatics skills for AI agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on BixBench.

chembl-database-bioactivity
🎯cell-figure-guide🎯Skill

Part of SciAgent-Skills, a collection of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Boosted BixBench scores from 65% to 92%.

cell-figure-guide
🎯clinicaltrials-database-search🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering computational biology, cheminformatics, and biostatistics. Each skill provides runnable code examples, key parameters, troubleshooting guides, and best practices.

clinicaltrials-database-search
🎯pyimagej-fiji-bridge🎯Skill

A bioinformatics skill from SciAgent-Skills, a library of 199 scientific computing skills for Claude Code that boosted BixBench accuracy from 65% to 92%, covering genomics, proteomics, drug discovery, and more.

pyimagej-fiji-bridge
🎯seaborn-statistical-plots🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills. Listed under the Data Visualization category, which covers tools like Plotly and Seaborn for scientific computing.

seaborn-statistical-plots
🎯opentargets-database🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% on BixBench.

opentargets-database
🎯alphafold-database-access🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering computational biology, cheminformatics, and biostatistics. Improved BixBench benchmark accuracy from 65% to 92% without fine-tuning.

alphafold-database-access
🎯deepchem🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents. This skill provides guidance for computational chemistry and drug discovery using DeepChem, within the structural biology domain alongside RDKit, AutoDock Vina, ChEMBL, and PDB.

deepchem
🎯statsmodels-statistical-modeling🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills that equips AI coding agents with domain knowledge for computational biology, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark.

statsmodels-statistical-modeling
🎯dailymed-database🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

dailymed-database
🎯scientific-visualization🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills. Covers computational biology, cheminformatics, and biostatistics, boosting BixBench accuracy by over 26 percentage points.

scientific-visualization
🎯scientific-literature-search🎯Skill

The largest open-source skill library for scientific AI agents, with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on BixBench.

scientific-literature-search
🎯plotly-interactive-plots🎯Skill

Skill

plotly-interactive-plots
🎯fda-database🎯Skill

A drug discovery and structural biology skill from SciAgent-Skills, a library of 199 bioinformatics skills that includes 53 database connectors and 26 skills for structural biology and drug discovery workflows.

fda-database
🎯exploratory-data-analysis🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and biostatistics, which boosted BixBench scores from 65% to 92%.

exploratory-data-analysis
🎯simpy-discrete-event-simulation🎯Skill

A library of 199 bioinformatics skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, boosting performance from a 65% baseline.

simpy-discrete-event-simulation
🎯shap-model-explainability🎯Skill

A bioinformatics agent skill from SciAgent-Skills, a 199-skill library that boosted BixBench accuracy from 65% to 92% by equipping Claude Code with domain-specific knowledge for computational biology, covering RNA-seq, single-cell analysis, proteomics, and drug discovery.

shap-model-explainability
🎯general-figure-guide🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92.0% accuracy on the BixBench benchmark, a 26.7 percentage point improvement over baseline.

general-figure-guide
🎯scikit-survival-analysis🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills that equips AI coding agents with domain knowledge for computational biology, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark.

scikit-survival-analysis
🎯cobrapy-metabolic-modeling🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, a 27-point improvement over baseline.

cobrapy-metabolic-modeling
🎯nextflow-workflow-engine🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

nextflow-workflow-engine
🎯lamindb-data-management🎯Skill

Part of SciAgent-Skills, the largest open-source scientific skill library for AI coding agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

lamindb-data-management
🎯openalex-database🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark.

openalex-database
🎯networkx-graph-analysis🎯Skill

The largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and more. It boosted BixBench scores from 65% to 92%, equipping Claude Code with domain-specific knowledge for computational biology without fine-tuning.

networkx-graph-analysis
🎯maxquant-proteomics🎯Skill

The largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92.0% accuracy on the BixBench benchmark.

maxquant-proteomics
🎯arboreto-grn-inference🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering genomics, proteomics, drug discovery, and biostatistics, which boosted BixBench accuracy from 65% to 92%.

arboreto-grn-inference
🎯uniprot-protein-database🎯Skill

SciAgent-Skills is the largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. It boosted BixBench accuracy from 65% to 92%.

uniprot-protein-database
🎯polars-dataframes🎯Skill

A library of 199 bioinformatics skills for Claude Code that covers RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

polars-dataframes
🎯diffdock🎯Skill

Part of SciAgent-Skills, a 199-skill bioinformatics library for Claude Code covering structural biology, drug discovery, and molecular docking workflows. The library improved BixBench benchmark scores from 65% to 92%.

diffdock
🎯biorxiv-database🎯Skill

Part of SciAgent-Skills, a bioinformatics skill library providing 199 skills for AI coding agents. Designed for Claude Code, it provides domain-specific knowledge for RNA-seq, single-cell analysis, drug discovery, and protein structure prediction without fine-tuning.

biorxiv-database
🎯dask-parallel-computing🎯Skill

The largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery that boosted BixBench accuracy from 65% to 92%.

dask-parallel-computing
🎯molfeat-molecular-featurization🎯Skill

Part of a Laravel and Vue skills collection for AI coding agents, installable via the universal skills CLI. Includes optional Vue-related skills for Nuxt, VueUse, and Reka UI, with support for OpenCode agent integration.

molfeat-molecular-featurization
🎯scikit-bio🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

scikit-bio
🎯pubchem-compound-search🎯Skill

Part of SciAgent-Skills, an open-source library providing 199 scientific skills for AI agents with a focus on genomics, proteomics, drug discovery, and scientific computing. Boosted BixBench benchmark performance from 65% to 92% when used with Claude Code.

pubchem-compound-search
🎯simpleitk-image-registration🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents, offering 199 bioinformatics skills for Claude Code that span RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, with 92% accuracy on BixBench.

simpleitk-image-registration
🎯pdb-database🎯Skill

Part of SciAgent-Skills, the largest open-source scientific skill library with 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on BixBench.

pdb-database
🎯ddinter-database🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery for Claude Code. Achieved 92% accuracy on the BixBench bioinformatics benchmark.

ddinter-database
🎯nejm-figure-guide🎯Skill

A skill from SciAgent-Skills, which provides 199 bioinformatics skills for Claude Code covering computational biology, cheminformatics, and biostatistics. The skill library boosted BixBench benchmark performance from 65% to 92.0% without requiring model fine-tuning.

nejm-figure-guide
🎯literature-review🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills. Belongs to the Scientific Writing category covering manuscript writing, peer review, LaTeX posters, slides, and figure guides.

literature-review
🎯aeon🎯Skill

Part of SciAgent-Skills, providing 199 ready-to-use scientific skills for AI coding agents across genomics, proteomics, drug discovery, and scientific writing. Each skill is a self-contained SKILL.md file with runnable code examples and best practices.

aeon
🎯torch-geometric-graph-neural-networks🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

torch-geometric-graph-neural-networks
🎯geopandas-geospatial🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills, equipping Claude Code with domain knowledge for computational biology, bioinformatics, cheminformatics, and biostatistics. Achieved 92.0% on the BixBench benchmark.

geopandas-geospatial
🎯mofaplus-multi-omics🎯Skill

Part of SciAgent-Skills, a 199-skill bioinformatics library for Claude Code covering systems biology and multi-omics integration using tools like COBRApy, LaminDB, Reactome, and STRING. The library improved BixBench benchmark scores from 65% to 92%.

mofaplus-multi-omics
🎯etetoolkit🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark.

etetoolkit
🎯zinc-database🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark (up from 65% baseline).

zinc-database
🎯plannotate-plasmid-annotation🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills. Covers computational biology topics including genomics, structural biology, drug discovery, and molecular biology with practical code examples and best practices.

plannotate-plasmid-annotation
🎯latex-research-posters🎯Skill

Part of SciAgent-Skills, a 199-skill bioinformatics collection for Claude Code that includes LaTeX poster and slide creation alongside skills for RNA-seq, genomics, proteomics, and drug discovery.

latex-research-posters
🎯hypothesis-generation🎯Skill

The largest open-source skill library for scientific AI agents, with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, a 27-point improvement over baseline Claude Code.

hypothesis-generation
🎯scikit-learn-machine-learning🎯Skill

A collection of 199 scientific computing skills that turn AI coding assistants into domain experts, covering areas like machine learning, data analysis, and scientific workflows with a 92% BixBench score.

scikit-learn-machine-learning
🎯citation-management🎯Skill

Part of a comprehensive Unity Claude Code plugin providing 35 skills covering the entire Unity Game Engine documentation, based on Unity 6.3 LTS. Contains 95 files with over 44,500 lines of actionable development guidance, patterns, and API references.

citation-management
🎯interpro-database🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for Claude Code that covers genomics, proteomics, drug discovery, and more. The collection boosted BixBench benchmark accuracy from 65% to 92% by providing domain-specific scientific knowledge.

interpro-database
🎯statistical-significance-annotation🎯Skill

Skill

statistical-significance-annotation
🎯matchms-spectral-matching🎯Skill

SciAgent-Skills is a collection of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, boosting BixBench scores from 65% to 92%.

matchms-spectral-matching
🎯pyopenms-mass-spectrometry🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents. This skill covers mass spectrometry analysis using PyOpenMS, within the proteomics and protein engineering domain alongside ESM, UniProt, matchms, and HMDB tools.

pyopenms-mass-spectrometry
🎯pyhealth🎯Skill

Part of SciAgent-Skills, a collection of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, which boosted BixBench scores from 65% to 92%.

pyhealth
🎯benchling-integration🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. The collection achieved 92% accuracy on the BixBench benchmark.

benchling-integration
🎯scientific-critical-thinking🎯Skill

The largest open-source scientific skill library with 199 bioinformatics skills for Claude Code, covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on BixBench, a +26.7 point improvement over baseline.

scientific-critical-thinking
🎯scikit-image-processing🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills that equips AI coding agents with domain-specific knowledge for computational biology, covering genomics, cell biology, proteomics, drug discovery, and scientific computing.

scikit-image-processing
🎯lancet-figure-guide🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92.0% accuracy on the BixBench benchmark.

lancet-figure-guide
🎯emdb-database🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, which boosted BixBench accuracy from 65% to 92%.

emdb-database
🎯peer-review-methodology🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills, this skill falls under the scientific writing category covering peer review methodology, manuscript evaluation, and structured feedback for scientific publications.

peer-review-methodology
🎯clinical-decision-support-documents🎯Skill

Part of SciAgent-Skills, equipping Claude Code with domain-specific knowledge for computational biology and bioinformatics through 199 self-contained skills. Covers RNA-seq, single-cell analysis, drug discovery, and scientific computing with no model fine-tuning needed.

clinical-decision-support-documents
🎯viennarna-structure-prediction🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92.0% on BixBench.

viennarna-structure-prediction
🎯mdanalysis-trajectory🎯Skill

A collection of 199 bioinformatics skills for AI coding agents, covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, a 27-point improvement over baseline Claude Code.

mdanalysis-trajectory
🎯gtopdb-database🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery for Claude Code. Achieved 92% accuracy on the BixBench bioinformatics benchmark.

gtopdb-database
🎯pylabrobot🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark with a +26.7 percentage point improvement over baseline.

pylabrobot
🎯adaptyv-bio🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for Claude Code covering genomics, proteomics, drug discovery, and biostatistics that boosted BixBench accuracy from 65% to 92%.

adaptyv-bio
🎯brenda-database🎯Skill

Part of SciAgent-Skills, a collection of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Boosted BixBench scores from 65% to 92%.

brenda-database
🎯cancer-research-figure-guide🎯Skill

Skill

cancer-research-figure-guide
🎯libsbml-network-modeling🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, a 26.7 percentage point improvement over baseline Claude Code.

libsbml-network-modeling
🎯flowio-flow-cytometry🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% on the BixBench benchmark, up from 65% without skills.

flowio-flow-cytometry
🎯metabolomics-workbench-database🎯Skill

Part of SciAgent-Skills, the largest open-source scientific skill library with 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench bioinformatics benchmark.

metabolomics-workbench-database
🎯histolab-wsi-processing🎯Skill

199 bioinformatics skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, boosting BixBench benchmark accuracy from 65% to 92% without fine-tuning.

histolab-wsi-processing
🎯omero-integration🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% on the BixBench benchmark, up from 65% without skills.

omero-integration
🎯torchdrug🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% on the BixBench benchmark.

torchdrug
🎯imaging-data-commons🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills. Covers genomics, proteomics, drug discovery, biostatistics, and scientific computing, achieving 92% accuracy on the BixBench benchmark.

imaging-data-commons
🎯unichem-database🎯Skill

Part of SciAgent-Skills, a collection of 199 bioinformatics skills for Claude Code covering genomics, proteomics, drug discovery, and scientific computing. Each skill is a self-contained SKILL.md with runnable code examples and best practices.

unichem-database
🎯pymatgen🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% on the BixBench benchmark.

pymatgen
🎯spikeinterface-electrophysiology🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

spikeinterface-electrophysiology
🎯umap-learn🎯Skill

The largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92.0% accuracy on BixBench-Verified-50, boosting Claude Code's baseline from 65% to 92%.

umap-learn
🎯pride-database🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, a 27-point improvement over baseline.

pride-database
🎯neuropixels-analysis🎯Skill

A bioinformatics skill from the SciAgent-Skills library, which provides 199 scientific skills for AI coding agents covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. The library achieved 92.0% accuracy on the BixBench benchmark, a 26.7 percentage point improvement over baseline.

neuropixels-analysis
🎯pymoo🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved a 92% score on the BixBench benchmark, up from a 65% baseline.

pymoo
🎯drugbank-database-access🎯Skill

A bioinformatics skill from SciAgent-Skills, a library of 199 scientific skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery that boosted BixBench accuracy from 65% to 92%.

drugbank-database-access
🎯uspto-database🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents that covers genomics, proteomics, drug discovery, biostatistics, and scientific computing. Boosted BixBench benchmark accuracy from 65% to 92% with no fine-tuning required.

uspto-database
🎯pytdc-therapeutics-data-commons🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for AI coding agents covering genomics, proteomics, drug discovery, and more, which boosted BixBench accuracy from 65% to 92%.

pytdc-therapeutics-data-commons
🎯pnas-figure-guide🎯Skill

A Claude Code skill from the SciAgent-Skills collection that provides guidelines for creating figures meeting PNAS (Proceedings of the National Academy of Sciences) publication standards, covering formatting, sizing, and submission requirements.

pnas-figure-guide
🎯trackpy-particle-tracking🎯Skill

Part of SciAgent-Skills, a library of 199 scientific computing and bioinformatics skills for Claude Code that achieved 92% accuracy on BixBench, covering RNA-seq, single-cell analysis, proteomics, and computational biology.

trackpy-particle-tracking
🎯hmdb-database🎯Skill

A specification-driven document-flow framework for AI-assisted software development that defines an 8-layer SDD flow (BRD through Code), with both a Hermes MCP server and a Claude Code plugin implementation sharing a common conformance test suite.

hmdb-database
🎯zarr-python🎯Skill

Part of SciAgent-Skills, a collection of 199 bioinformatics skills that turns AI coding agents into life sciences experts, covering scientific computing, genomics, and drug discovery with 92% accuracy on BixBench.

zarr-python
🎯homer-motif-analysis🎯Skill

The largest open-source bioinformatics skill library for AI agents, with 199 skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% on the BixBench benchmark, up from a 65% baseline.

homer-motif-analysis
🎯science-figure-guide🎯Skill

A Claude Code skill from the SciAgent-Skills collection (199 scientific skills, BixBench 92%) that provides guidance on creating publication-quality scientific figures, covering data visualization best practices, formatting, and journal-specific requirements.

science-figure-guide
🎯protocolsio-integration🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92.0% accuracy on BixBench, up from 65% baseline.

protocolsio-integration
🎯rowan🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and more. Achieved 92.0% accuracy on BixBench-Verified-50.

rowan
🎯neurokit2🎯Skill

Part of the SciAgent-Skills collection, offering 199 plug-and-play bioinformatics skills for AI coding agents. Covers RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and other life sciences domains with no fine-tuning required.

neurokit2
🎯degenerate-input-filtering🎯Skill

The largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, up from 65% baseline.

degenerate-input-filtering
🎯transformers-bio-nlp🎯Skill

A Claude Code plugin that lets you get a second opinion from GitHub Copilot during development. Part of a plugin collection that integrates with multiple AI coding assistants including Claude, Codex, and Gemini.

transformers-bio-nlp
🎯opentrons-protocol-api🎯Skill

Part of SciAgent-Skills, the largest open-source scientific skill library for AI coding agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

opentrons-protocol-api
🎯vaex-dataframes🎯Skill

Part of SciAgent-Skills, the largest open-source scientific skill library for AI agents with 199 skills covering genomics, proteomics, drug discovery, biostatistics, and scientific computing, boosting BixBench accuracy from 65% to 92%.

vaex-dataframes
🎯pathml🎯Skill

Part of SciAgent-Skills, a collection of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery that boosted BixBench scores from 65% to 92%.

pathml
🎯medchem🎯Skill

Part of SciAgent-Skills, a library of 199 bioinformatics skills for scientific AI agents covering structural biology, drug discovery, cheminformatics, and more. The collection achieved 92% accuracy on the BixBench benchmark.

medchem
🎯macs3-peak-calling🎯Skill

A genomics and bioinformatics skill from SciAgent-Skills, a library of 199 scientific computing skills for AI coding agents that boosted BixBench benchmark accuracy from 65% to 92%, covering areas like RNA-seq, single-cell analysis, and proteomics.

macs3-peak-calling
🎯elife-figure-guide🎯Skill

The largest open-source scientific skill library for AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery. Achieved 92% accuracy on the BixBench benchmark, a 27-point improvement over the baseline.

elife-figure-guide
🎯sgrna-design-guide🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents with 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% on the BixBench benchmark.

sgrna-design-guide
🎯sar-analysis🎯Skill

Part of SciAgent-Skills, the largest open-source skill library for scientific AI agents, providing 199 bioinformatics skills covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, achieving 92% accuracy on the BixBench benchmark.

sar-analysis
🎯hypogenic-hypothesis-generation🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and biostatistics, achieving 92% accuracy on BixBench.

hypogenic-hypothesis-generation
🎯nan-safe-correlation🎯Skill

Part of the SciAgent-Skills library with 199 bioinformatics skills for Claude Code, covering RNA-seq, single-cell analysis, genomics, proteomics, and drug discovery, which boosted BixBench accuracy from 65% to 92%.

nan-safe-correlation
🎯western-blot-quantification🎯Skill

Skill

western-blot-quantification
🎯scientific-brainstorming🎯Skill

A library of 199 bioinformatics skills for Claude Code covering RNA-seq, single-cell analysis, genomics, proteomics, drug discovery, and more, achieving 92% accuracy on the BixBench benchmark (up from 65% baseline).

scientific-brainstorming
🎯smina-molecular-docking🎯Skill

Skill

smina-molecular-docking
🎯sciagent-skill-creator🎯Skill

Skill

sciagent-skill-creator
🎯mdtraj-trajectory-analysis🎯Skill

Skill

mdtraj-trajectory-analysis
🎯plink2-gwas-analysis🎯Skill

Skill

plink2-gwas-analysis
🎯pydeseq2-differential-expression🎯Skill

Skill

pydeseq2-differential-expression
🎯gene-database🎯Skill

Skill

gene-database
🎯archs4-database🎯Skill

Skill

archs4-database
🎯deseq2-differential-expression🎯Skill

Skill

deseq2-differential-expression
🎯clinpgx-database🎯Skill

Skill

clinpgx-database
🎯scanpy-scrna-seq🎯Skill

Skill

scanpy-scrna-seq
🎯bedtools-genomic-intervals🎯Skill

Skill

bedtools-genomic-intervals
🎯gseapy-gene-enrichment🎯Skill

Skill

gseapy-gene-enrichment
🎯monarch-database🎯Skill

Skill

monarch-database
🎯fastp-fastq-preprocessing🎯Skill

Skill

fastp-fastq-preprocessing
🎯bcftools-variant-manipulation🎯Skill

Skill

bcftools-variant-manipulation
🎯geo-database🎯Skill

Skill

geo-database
🎯gatk-variant-calling🎯Skill

Skill

gatk-variant-calling
🎯plotly-interactive-visualization🎯Skill

Skill

plotly-interactive-visualization
🎯geniml🎯Skill

Skill

geniml
🎯bioservices-multi-database🎯Skill

Skill

bioservices-multi-database
🎯gnomad-database🎯Skill

Skill

gnomad-database
🎯snpeff-variant-annotation🎯Skill

Skill

snpeff-variant-annotation
🎯single-cell-annotation-guide🎯Skill

Skill

single-cell-annotation-guide
🎯deeptools-ngs-analysis🎯Skill

Skill

deeptools-ngs-analysis
🎯dbsnp-database🎯Skill

Skill

dbsnp-database
🎯cellxgene-census🎯Skill

Skill

cellxgene-census
🎯remap-database🎯Skill

Skill

remap-database
🎯prokka-genome-annotation🎯Skill

Skill

prokka-genome-annotation
🎯seaborn-statistical-visualization🎯Skill

Skill

seaborn-statistical-visualization
🎯salmon-rna-quantification🎯Skill

Skill

salmon-rna-quantification
🎯multiqc-qc-reports🎯Skill

Skill

multiqc-qc-reports
🎯quickgo-database🎯Skill

Skill

quickgo-database
🎯cnvkit-copy-number🎯Skill

Skill

cnvkit-copy-number
🎯encode-database🎯Skill

Skill

encode-database
🎯gtars🎯Skill

Skill

gtars
🎯clinvar-database🎯Skill

Skill

clinvar-database
🎯jaspar-database🎯Skill

Skill

jaspar-database
🎯ena-database🎯Skill

Skill

ena-database
🎯star-rna-seq-aligner🎯Skill

Skill

star-rna-seq-aligner
🎯featurecounts-rna-counting🎯Skill

Skill

featurecounts-rna-counting
🎯harmony-batch-correction🎯Skill

Skill

harmony-batch-correction
🎯anndata-data-structure🎯Skill

Skill

anndata-data-structure
🎯regulomedb-database🎯Skill

Skill

regulomedb-database
🎯samtools-bam-processing🎯Skill

Skill

samtools-bam-processing
🎯ucsc-genome-browser🎯Skill

Skill

ucsc-genome-browser
🎯celltypist-cell-annotation🎯Skill

Skill

celltypist-cell-annotation
🎯mouse-phenome-database🎯Skill

Skill

mouse-phenome-database
🎯cbioportal-database🎯Skill

Skill

cbioportal-database
🎯cosmic-database🎯Skill

Skill

cosmic-database
🎯opentrons-integration🎯Skill

Skill

opentrons-integration
🎯scvi-tools-single-cell🎯Skill

Skill

scvi-tools-single-cell
🎯pysam-genomic-files🎯Skill

Skill

pysam-genomic-files
🎯kegg-database🎯Skill

Skill

kegg-database
🎯bwa-mem2-dna-aligner🎯Skill

Skill

bwa-mem2-dna-aligner
🎯ensembl-database🎯Skill

Skill

ensembl-database
🎯popv-cell-annotation🎯Skill

Skill

popv-cell-annotation
🎯gwas-database🎯Skill

Skill

gwas-database
🎯gget-genomic-databases🎯Skill

Skill

gget-genomic-databases
🎯busco-status-interpretation🎯Skill

Skill

busco-status-interpretation
🎯depmap-crispr-essentiality🎯Skill

Skill

depmap-crispr-essentiality
🎯single-cell-annotation🎯Skill

Skill

single-cell-annotation
🎯vcf-variant-filtering🎯Skill

Skill

vcf-variant-filtering
🎯bakta-genome-annotation🎯Skill

Skill

bakta-genome-annotation
🎯roary-pangenome🎯Skill

Skill

roary-pangenome